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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178795828_178795982_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
178795828 - 178795982
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGTTCTTTGATT
Flanking Amino Acid:
EYELEVLVDDSDHTGDSTHS
Intron Amino Acid Position:
1753

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.5
28.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
81.8
0.72
0.9
81
35.7
Minor 5ss
40.8
-1
2.8
57.5
39.6
Minor BPS
77.8
0.96
1
87.51
31.6

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310