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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178805255_178809056_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
178805255 - 178809056
Intron Length:
3802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTACAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TATATTTTTACA
Flanking Amino Acid:
LMKKDLALPIGNEFEEDLEI
Intron Amino Acid Position:
2155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
78.6
0.71
1
78.6
31
Major PPT
76.2
0.59
0.9
72.4
37
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
56.9
0.21
1.6
68.51
38

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310