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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178811241_178813051_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
178811241 - 178813051
Intron Length:
1811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
TTTCCCTAAGTC
Flanking Amino Acid:
GDVVHVPNMKVEVKAIPVSQ
Intron Amino Acid Position:
2278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
72.5
0.51
0.9
65.9
39.7
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
55.9
0.17
1.9
71.77
39.7

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310