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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178813265_178815926_F

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
178813265 - 178815926
Intron Length:
2662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAC
5'SS Class:
strong_major
3'SS Sequence:
CATCTGTTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTTCATTTAATT
Flanking Amino Acid:
ARYIAITMMKAYENYSFEEL
Intron Amino Acid Position:
2349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.9
80.8
27
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
64.9
0.34
1
60.7
40
Minor 5ss
39.8
-1.1
2.9
52
45.2
Minor BPS
65.3
0.56
1.5
79.31
36.5

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310