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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178815983_178816369_F

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
178815983 - 178816369
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATGCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
ATGATCTCAATT
Flanking Amino Acid:
ELRFASPTPKRPSENMLIRV
Intron Amino Acid Position:
2367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
69.2
0.43
1
62.6
43.3
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
56.7
0.29
1.6
70.99
40.3

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310