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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178816486_178818110_F

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
178816486 - 178818110
Intron Length:
1625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACTTAAT
5'SS Class:
major
3'SS Sequence:
TGTTTGCTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTAACT
Flanking Amino Acid:
IHVTIDGIEIDAGLEVKVKD
Intron Amino Acid Position:
2406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
80
34.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.1
0.65
0.9
73.1
37.4
Minor 5ss
36.4
-1.5
3
51.3
45.2
Minor BPS
80.2
1.03
1.1
92.12
30.1

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310