Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178832540_178835480_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

178832540 - 178835480

Intron Length:

2941

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

ATG|GCAAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

TAATTCTGAAGT

Flanking Amino Acid:

GGNQYLRHEDEQVLLDQNVQ

Intron Amino Acid Position:

2644

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

1.1

75.2

40.6

Major BPS

82.1

0.8

71.6

36.4

Major PPT

1.1

0.4

13.8

Minor 5ss

31.7

-2.1

46.4

44.2

Minor BPS

58.2

0.34

1.8

74.78

41.5

Associated Gene:

Gene:

MYCBP2

Ensembl Gene ID:

ENSAPLG00000012782

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013438

178697972 - 178887281

189310