About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178852778_178853506_F

Intron Information:

Intron Rank:
56
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
178852778 - 178853506
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATTC
5'SS Class:
major
3'SS Sequence:
TCACTTTCTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTTTTAAAT
Flanking Amino Acid:
REKQAAAREKIKQSRRKPMQ
Intron Amino Acid Position:
3290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
70.5
34.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.5
0.62
0.8
72.7
32
Minor 5ss
48.7
-0.1
2.7
68.2
42.9
Minor BPS
75.1
0.86
1.2
87.12
31.6

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310