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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178854571_178856193_F

Intron Information:

Intron Rank:
58
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
178854571 - 178856193
Intron Length:
1623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTCCT
5'SS Class:
major
3'SS Sequence:
GATTTCTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GGTTCTGTAACT
Flanking Amino Acid:
PESNMKSMPPSLETSPITDT
Intron Amino Acid Position:
3427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
68.4
42.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
79.3
0.66
0.8
73.9
36.4
Minor 5ss
35.9
-1.6
3.1
51.8
44.5
Minor BPS
63.1
0.49
2
81.37
40.2

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310