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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178856352_178856782_F

Intron Information:

Intron Rank:
59
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
178856352 - 178856782
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTGAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TGCTTTTGAATA
Flanking Amino Acid:
PRRRVNSGDAEVGSSLLRHP
Intron Amino Acid Position:
3480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
67.8
0.4
1
65.5
39.9
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
57.7
0.24
1.4
63.99
36.9

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310