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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178856983_178857381_F

Intron Information:

Intron Rank:
60
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
178856983 - 178857381
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTAATA
5'SS Class:
major
3'SS Sequence:
TATTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTATTTTATTT
Flanking Amino Acid:
KSACRVFAMEAFNWLLCNVI
Intron Amino Acid Position:
3547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
75.3
33.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.8
0.76
0.8
82.6
33.4
Minor 5ss
43.2
-0.7
2.8
58
46.2
Minor BPS
55.9
0.26
1.6
72.59
38.9

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310