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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178859757_178860363_F

Intron Information:

Intron Rank:
62
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
178859757 - 178860363
Intron Length:
607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TATGTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
CAGTATTCAAAG
Flanking Amino Acid:
SGSALQQMALRCWSLKFKQS
Intron Amino Acid Position:
3650

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
76.5
0.6
0.9
73.8
41.4
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
43.5
-0.6
1.8
42.95
42.1

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310