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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178864098_178864235_F

Intron Information:

Intron Rank:
66
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
178864098 - 178864235
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTATCAGTATCT
Flanking Amino Acid:
LRVFRLITSQVFGKLISGDA
Intron Amino Acid Position:
3880

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
83.9
30.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
85.4
0.8
0.8
77.4
36.3
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
48.6
-0
2.4
78.16
43.7

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310