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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178870172_178873197_F

Intron Information:

Intron Rank:
71
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
178870172 - 178873197
Intron Length:
3026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
CCTTCTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CCTTCTTTAACA
Flanking Amino Acid:
IIKLIKDMAAGHLSEAWSRV
Intron Amino Acid Position:
4156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80
0.68
0.8
76.2
30.9
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
78.8
0.9
1.2
78.6
38.6

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310