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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178873318_178875091_F

Intron Information:

Intron Rank:
72
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
178873318 - 178875091
Intron Length:
1774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGAATT
5'SS Class:
major
3'SS Sequence:
TGTCTTTAAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTGTCTTTAAAT
Flanking Amino Acid:
SPVRCIATTRLWLALASLCV
Intron Amino Acid Position:
4196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
78.3
36.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
69.2
0.43
1
66.6
38.6
Minor 5ss
40.7
-1
3.1
55.2
42.8
Minor BPS
78.5
0.97
1.3
89.08
35.6

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310