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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178875194_178877139_F

Intron Information:

Intron Rank:
73
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
178875194 - 178877139
Intron Length:
1946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGATTG
5'SS Class:
major
3'SS Sequence:
TTACTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTTTCTTACTT
Flanking Amino Acid:
MGKDGQQKQMPMCDNHDDGE
Intron Amino Acid Position:
4230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
0.9
70.3
36.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.5
0.89
0.7
88.4
28.5
Minor 5ss
36.3
-1.6
3.2
44.2
44.6
Minor BPS
69.5
0.69
1.6
83.97
37.3

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310