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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178880328_178881418_F

Intron Information:

Intron Rank:
76
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
178880328 - 178881418
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTACTTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
TTACTTTTAATA
Flanking Amino Acid:
GSVCSDTDCQEYAKIACSKT
Intron Amino Acid Position:
4352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.8
88.7
25.2
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
76.2
0.59
0.9
73.7
35.4
Minor 5ss
42.3
-0.8
2.8
59.2
45.4
Minor BPS
68.9
0.59
1.1
73
32.5

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310