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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178882202_178883163_F

Intron Information:

Intron Rank:
78
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
178882202 - 178883163
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
FGFMSCPICKNKINHTVLKD
Intron Amino Acid Position:
4451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87.4
0.84
0.8
85.9
32.9
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
MYCBP2
Ensembl Gene ID:
ENSAPLG00000012782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013438
178697972 - 178887281
189310