Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178886093_178887165_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

178886093 - 178887165

Intron Length:

1073

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGTATTT

5'SS Class:

major

3'SS Sequence:

AAATTCCGTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAA

U12 Branch Point Sequence:

TTTCTCTTAAAT

Flanking Amino Acid:

PKEELPHCPAGPKGKQLEGT

Intron Amino Acid Position:

4612

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

1.1

74.4

36.8

Major BPS

77.8

0.69

78.2

31.8

Major PPT

0.27

55.9

40.1

Minor 5ss

42.6

-0.8

3.4

64.9

46.4

Minor BPS

77.3

0.93

1.3

90.72

Associated Gene:

Gene:

MYCBP2

Ensembl Gene ID:

ENSAPLG00000012782

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013438

178697972 - 178887281

189310