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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178903336_178905067_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
178903336 - 178905067
Intron Length:
1732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
TTAGAGACATAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATTAG
U12 Branch Point Sequence:
TATTAGAGACAT
Flanking Amino Acid:
ARPSFMDLPKIMSFYIFAYY
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
52
0.05
1.6
51.8
43.6
Major PPT
48.3
-0.1
1.2
47.9
43.6
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
34.7
-1
2.4
57.71
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008898
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009257
178898821 - 178913454
14634