Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_178936149_178936960_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

178936149 - 178936960

Intron Length:

812

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATATAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTTTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

CTTTCTGAAATA

Flanking Amino Acid:

FSNEARNIPKRFHPPTVVGT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

0.9

78.3

30.6

Major BPS

82.1

0.8

71.6

36.4

Major PPT

88.9

0.88

0.7

88.2

29.1

Minor 5ss

40.5

-1.1

2.7

50.4

46.1

Minor BPS

48.3

-0.1

2.3

66.01

41.8

Associated Gene:

Gene:

ACOD1

Ensembl Gene ID:

ENSAPLG00000005580

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005769

178935194 - 178939608

4415