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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179037621_179038086_F

Intron Information:

Intron Rank:
147811
Intron Class:
major
Intron Phase:
Intron Coordinates:
179037621 - 179038086
Intron Length:
466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAAGTT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGCTCCATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
74
34.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
95.8
1.03
0.5
92.1
18.3
Minor 5ss
35.9
-1.6
3.7
52.6
45.6
Minor BPS
72.4
0.78
1.6
86
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029551
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043207
179037273 - 179081700
44428