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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179038137_179040983_F

Intron Information:

Intron Rank:
147815
Intron Class:
major
Intron Phase:
Intron Coordinates:
179038137 - 179040983
Intron Length:
2847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTGTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TCATTCTGAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
83.9
0.76
0.9
84.9
30
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
58.3
0.26
1.5
66.17
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029551
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046395
179028493 - 179041307
12815