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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179038137_179051507_F

Intron Information:

Intron Rank:
147809
Intron Class:
major
Intron Phase:
Intron Coordinates:
179038137 - 179051507
Intron Length:
13371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
GGTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTTCATACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
100
1.24
0.5
100
0
Major PPT
82
0.72
0.9
73.1
42.1
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
47.2
-0.3
2
58.52
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029551
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043207
179037273 - 179081700
44428
ENSAPLT00000029730
179034924 - 179081700
46777