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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179203607_179240954_F

Intron Information:

Intron Rank:
135481
Intron Class:
major
Intron Phase:
Intron Coordinates:
179203607 - 179240954
Intron Length:
37348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGGT
5'SS Class:
major
3'SS Sequence:
TTCTGTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCTGTCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.7
40.9
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
85.7
0.8
0.8
79.8
32.3
Minor 5ss
31
-2.2
3.6
47.4
48
Minor BPS
48.5
-0.2
1.9
55.39
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022894
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019902
179202907 - 179242079
39173