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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179306366_179308195_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
179306366 - 179308195
Intron Length:
1830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCAGTAT
5'SS Class:
major
3'SS Sequence:
TTTCTCTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTCTCTTAACA
Flanking Amino Acid:
ELVYLQILIKSWTTNLHVKQ
Intron Amino Acid Position:
1540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1
65.2
36.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
84.4
0.77
0.8
81.1
29.4
Minor 5ss
31.2
-2.1
3.6
46
49.3
Minor BPS
84
1.06
1
88.68
27.3

Associated Gene:

Gene:
LMO7
Ensembl Gene ID:
ENSAPLG00000005073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005308
179306332 - 179348932
42601