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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179306366_179308756_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
179306366 - 179308756
Intron Length:
2391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGCAA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTCTCTTAACA
Flanking Amino Acid:
FCNDCYIRFKTGQPTSM*
Intron Amino Acid Position:
1778

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
68.6
38
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
84.4
0.77
0.8
81.1
29.4
Minor 5ss
31.8
-2.1
3.3
38.6
40.8
Minor BPS
84
1.06
1
88.68
27.3

Associated Gene:

Gene:
LMO7
Ensembl Gene ID:
ENSAPLG00000005073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042547
179306343 - 179349632
43290
ENSAPLT00000034373
179306343 - 179434860
128518
ENSAPLT00000030762
179306343 - 179434860
128518
ENSAPLT00000045696
179306343 - 179434860
128518