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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179308860_179310577_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
179308860 - 179310577
Intron Length:
1718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTATCACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TATTTTGTAAGG
Flanking Amino Acid:
GLCYHLHCFKCVACGCDLGG
Intron Amino Acid Position:
1744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
84.1
26.5
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
68.3
0.41
1
61.9
38.2
Minor 5ss
30.9
-2.2
3.5
46.6
48.7
Minor BPS
47.4
-0.3
2.3
59.25
43.2

Associated Gene:

Gene:
LMO7
Ensembl Gene ID:
ENSAPLG00000005073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030762
179306343 - 179434860
128518
ENSAPLT00000044917
179308196 - 179434860
126665
ENSAPLT00000020897
179308196 - 179434860
126665
ENSAPLT00000042547
179306343 - 179349632
43290
ENSAPLT00000020174
179308196 - 179434860
126665
ENSAPLT00000037923
179308196 - 179434860
126665
ENSAPLT00000019090
179308196 - 179434860
126665
ENSAPLT00000034373
179306343 - 179434860
128518
ENSAPLT00000045696
179306343 - 179434860
128518