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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179310687_179312054_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
179310687 - 179312054
Intron Length:
1368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTGTATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATTCTGTATCT
Flanking Amino Acid:
ASQTGSQTRSRSVSGKKICS
Intron Amino Acid Position:
1707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
100
1.24
0.5
100
0
Major PPT
70.9
0.47
1
63
42.7
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
49.3
0.03
2.2
72.42
44.8

Associated Gene:

Gene:
LMO7
Ensembl Gene ID:
ENSAPLG00000005073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019090
179308196 - 179434860
126665
ENSAPLT00000034373
179306343 - 179434860
128518
ENSAPLT00000045696
179306343 - 179434860
128518
ENSAPLT00000030762
179306343 - 179434860
128518
ENSAPLT00000044917
179308196 - 179434860
126665
ENSAPLT00000020897
179308196 - 179434860
126665
ENSAPLT00000042547
179306343 - 179349632
43290
ENSAPLT00000020174
179308196 - 179434860
126665
ENSAPLT00000037923
179308196 - 179434860
126665