Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

179312328 - 179313231

Intron Length:

904

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGAACC

5'SS Class:

strong_major

3'SS Sequence:

ACCTGTGTTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

TACCATTTACAT

Flanking Amino Acid:

PISLYGNSMRRGESLDNLDS

Intron Amino Acid Position:

1399

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

72.5

37.3

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

71.7

0.49

41.1

Minor 5ss

33.3

-1.9

3.1

43.9

43.5

Minor BPS

45.5

-0.2

1.8

60.75

42.5

Associated Gene:

Gene:

LMO7

Ensembl Gene ID:

ENSAPLG00000005073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019090

179308196 - 179434860

126665

ENSAPLT00000034373

179306343 - 179434860

128518

ENSAPLT00000045696

179306343 - 179434860

128518

ENSAPLT00000005308

179306332 - 179348932

42601

ENSAPLT00000030762

179306343 - 179434860

128518

ENSAPLT00000044917

179308196 - 179434860

126665

ENSAPLT00000020897

179308196 - 179434860

126665

ENSAPLT00000042547

179306343 - 179349632

43290

ENSAPLT00000020174

179308196 - 179434860

126665

ENSAPLT00000037923

179308196 - 179434860

126665

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179312328_179313231_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: