Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

179315239 - 179317090

Intron Length:

1852

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTGAT

5'SS Class:

strong_major

3'SS Sequence:

TCTATGTTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTAAT

U12 Branch Point Sequence:

GTGAAATTAATA

Flanking Amino Acid:

EERPGQSWSDRNKSKSTSEL

Intron Amino Acid Position:

1308

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.2

0.92

0.8

83.1

28.6

Major BPS

0.82

0.8

24.9

Major PPT

79.2

0.66

0.9

37.1

Minor 5ss

40.4

-1.1

3.2

57.3

47.4

Minor BPS

48.6

-0.1

1.8

59.44

39.9

Associated Gene:

Gene:

LMO7

Ensembl Gene ID:

ENSAPLG00000005073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020897

179308196 - 179434860

126665

ENSAPLT00000042547

179306343 - 179349632

43290

ENSAPLT00000020174

179308196 - 179434860

126665

ENSAPLT00000037923

179308196 - 179434860

126665

ENSAPLT00000019090

179308196 - 179434860

126665

ENSAPLT00000034373

179306343 - 179434860

128518

ENSAPLT00000045696

179306343 - 179434860

128518

ENSAPLT00000005308

179306332 - 179348932

42601

ENSAPLT00000030762

179306343 - 179434860

128518

ENSAPLT00000044917

179308196 - 179434860

126665

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179315239_179317090_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: