Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

179317522 - 179319616

Intron Length:

2095

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGTACT

5'SS Class:

major

3'SS Sequence:

TTGTTGCCTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTATATCT

Flanking Amino Acid:

EVLVETSQYQRHHEHYEGSK

Intron Amino Acid Position:

1264

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

1.1

78.3

35.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.56

0.9

66.9

40.5

Minor 5ss

40.8

-1

2.4

53.1

43.6

Minor BPS

59.8

0.38

1.8

84.15

36.8

Associated Gene:

Gene:

LMO7

Ensembl Gene ID:

ENSAPLG00000005073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044917

179308196 - 179434860

126665

ENSAPLT00000005308

179306332 - 179348932

42601

ENSAPLT00000030762

179306343 - 179434860

128518

ENSAPLT00000042547

179306343 - 179349632

43290

ENSAPLT00000020897

179308196 - 179434860

126665

ENSAPLT00000020174

179308196 - 179434860

126665

ENSAPLT00000037923

179308196 - 179434860

126665

ENSAPLT00000045696

179306343 - 179434860

128518

ENSAPLT00000019090

179308196 - 179434860

126665

ENSAPLT00000034373

179306343 - 179434860

128518

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179317522_179319616_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: