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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179320012_179321418_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
179320012 - 179321418
Intron Length:
1407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TCCCCCCTAAAA
Flanking Amino Acid:
ERENSKYLDEEQTVLTLNTL
Intron Amino Acid Position:
1133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
77.3
33.9
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
84.9
0.79
0.8
79.9
32.3
Minor 5ss
44.9
-0.6
3
64.1
47.4
Minor BPS
51.6
0.05
1.8
62.95
42.8

Associated Gene:

Gene:
LMO7
Ensembl Gene ID:
ENSAPLG00000005073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020897
179308196 - 179434860
126665
ENSAPLT00000042547
179306343 - 179349632
43290
ENSAPLT00000020174
179308196 - 179434860
126665
ENSAPLT00000037923
179308196 - 179434860
126665
ENSAPLT00000019090
179308196 - 179434860
126665
ENSAPLT00000034373
179306343 - 179434860
128518
ENSAPLT00000045696
179306343 - 179434860
128518
ENSAPLT00000005308
179306332 - 179348932
42601
ENSAPLT00000030762
179306343 - 179434860
128518
ENSAPLT00000044917
179308196 - 179434860
126665