Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

179321512 - 179323005

Intron Length:

1494

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATAGTTA

5'SS Class:

major

3'SS Sequence:

TCTAACCTAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

TCTTATTTATTT

Flanking Amino Acid:

WQKEQDRLLQEKYKREQEKL

Intron Amino Acid Position:

1102

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.4

0.58

70.8

35.5

Major BPS

88.7

0.96

0.8

36.5

Major PPT

68.9

0.42

62.5

38.1

Minor 5ss

45.8

-0.4

3.2

63.9

47.7

Minor BPS

58.1

0.33

1.8

76.23

41.2

Associated Gene:

Gene:

LMO7

Ensembl Gene ID:

ENSAPLG00000005073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044917

179308196 - 179434860

126665

ENSAPLT00000005308

179306332 - 179348932

42601

ENSAPLT00000030762

179306343 - 179434860

128518

ENSAPLT00000042547

179306343 - 179349632

43290

ENSAPLT00000020897

179308196 - 179434860

126665

ENSAPLT00000020174

179308196 - 179434860

126665

ENSAPLT00000037923

179308196 - 179434860

126665

ENSAPLT00000045696

179306343 - 179434860

128518

ENSAPLT00000019090

179308196 - 179434860

126665

ENSAPLT00000034373

179306343 - 179434860

128518

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179321512_179323005_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: