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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179323428_179326395_R

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
179323428 - 179326395
Intron Length:
2968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTAC
5'SS Class:
strong_major
3'SS Sequence:
GCAAATCCCACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCAAAT
U12 Branch Point Sequence:
TTGCCTTCTACT
Flanking Amino Acid:
QGDLGSNEQRGGPEPALPDL
Intron Amino Acid Position:
1017

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.7
34.8
Major BPS
62.1
0.3
1.2
67.3
37.8
Major PPT
59
0.2
1
50
38.8
Minor 5ss
43.5
-0.7
3
58.3
46.6
Minor BPS
51.6
0.13
1.9
73.8
42.9

Associated Gene:

Gene:
LMO7
Ensembl Gene ID:
ENSAPLG00000005073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045696
179306343 - 179434860
128518
ENSAPLT00000044917
179308196 - 179434860
126665
ENSAPLT00000034373
179306343 - 179434860
128518