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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179325150_179326395_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
179325150 - 179326395
Intron Length:
1246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AGCAACATAATT
Flanking Amino Acid:
QGDLGSNEQRGSSGYSYNSW
Intron Amino Acid Position:
1025

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.7
34.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
83.4
0.75
0.7
76.5
32.1
Minor 5ss
43.5
-0.7
3
58.3
46.6
Minor BPS
47.2
-0.1
1.8
62.24
41.3

Associated Gene:

Gene:
LMO7
Ensembl Gene ID:
ENSAPLG00000005073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042547
179306343 - 179349632
43290