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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179325360_179326395_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
179325360 - 179326395
Intron Length:
1036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTAC
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCAAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TATCTTTCAAAT
Flanking Amino Acid:
QGDLGSNEQRASEPISLKNL
Intron Amino Acid Position:
1025

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.7
34.8
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
66.6
0.37
1
63.5
36.7
Minor 5ss
43.5
-0.7
3
58.3
46.6
Minor BPS
53.5
0.19
1.6
72.06
38.4

Associated Gene:

Gene:
LMO7
Ensembl Gene ID:
ENSAPLG00000005073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020897
179308196 - 179434860
126665
ENSAPLT00000020174
179308196 - 179434860
126665
ENSAPLT00000019090
179308196 - 179434860
126665
ENSAPLT00000037923
179308196 - 179434860
126665
ENSAPLT00000005308
179306332 - 179348932
42601
ENSAPLT00000030762
179306343 - 179434860
128518