Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

179326457 - 179327105

Intron Length:

649

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTGAGTATA

5'SS Class:

major

3'SS Sequence:

TCTTATTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTAAT

U12 Branch Point Sequence:

TATCTCTTATTT

Flanking Amino Acid:

REFSSSLQNSGTETKLINGM

Intron Amino Acid Position:

1005

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.5

0.55

1.1

76.5

Major BPS

76.7

0.66

1.2

77.9

34.9

Major PPT

85.8

0.81

0.7

84.8

29.6

Minor 5ss

36.8

-1.5

2.9

52.2

44.4

Minor BPS

63.1

0.49

1.6

78.25

38.1

Associated Gene:

Gene:

LMO7

Ensembl Gene ID:

ENSAPLG00000005073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020897

179308196 - 179434860

126665

ENSAPLT00000042547

179306343 - 179349632

43290

ENSAPLT00000020174

179308196 - 179434860

126665

ENSAPLT00000037923

179308196 - 179434860

126665

ENSAPLT00000019090

179308196 - 179434860

126665

ENSAPLT00000034373

179306343 - 179434860

128518

ENSAPLT00000045696

179306343 - 179434860

128518

ENSAPLT00000005308

179306332 - 179348932

42601

ENSAPLT00000030762

179306343 - 179434860

128518

ENSAPLT00000044917

179308196 - 179434860

126665

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179326457_179327105_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: