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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179327210_179328697_R

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
179327210 - 179328697
Intron Length:
1488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ACCAACATTATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
AAATCCTCAATC
Flanking Amino Acid:
VMDVRRYGKNGTSENKWIDA
Intron Amino Acid Position:
970

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
59.7
0.22
0.9
50.9
37
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
64
0.42
1.5
67.73
37.3

Associated Gene:

Gene:
LMO7
Ensembl Gene ID:
ENSAPLG00000005073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034373
179306343 - 179434860
128518
ENSAPLT00000045696
179306343 - 179434860
128518
ENSAPLT00000030762
179306343 - 179434860
128518
ENSAPLT00000044917
179308196 - 179434860
126665
ENSAPLT00000019090
179308196 - 179434860
126665
ENSAPLT00000042547
179306343 - 179349632
43290
ENSAPLT00000005308
179306332 - 179348932
42601
ENSAPLT00000037923
179308196 - 179434860
126665