Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

179328860 - 179333153

Intron Length:

4294

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATGTG

5'SS Class:

strong_major

3'SS Sequence:

CTGTTTTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAA

U12 Branch Point Sequence:

TGTTAAAAGATA

Flanking Amino Acid:

SGAFVQTVEEGSPAKLSQLH

Intron Amino Acid Position:

916

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.9

78.6

35.9

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

85.3

0.79

0.8

80.7

31.4

Minor 5ss

35.7

-1.6

3.4

48.7

47.5

Minor BPS

39.3

-0.8

2.1

54.29

37.8

Associated Gene:

Gene:

LMO7

Ensembl Gene ID:

ENSAPLG00000005073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005308

179306332 - 179348932

42601

ENSAPLT00000030762

179306343 - 179434860

128518

ENSAPLT00000044917

179308196 - 179434860

126665

ENSAPLT00000020897

179308196 - 179434860

126665

ENSAPLT00000042547

179306343 - 179349632

43290

ENSAPLT00000020174

179308196 - 179434860

126665

ENSAPLT00000037923

179308196 - 179434860

126665

ENSAPLT00000019090

179308196 - 179434860

126665

ENSAPLT00000034373

179306343 - 179434860

128518

ENSAPLT00000045696

179306343 - 179434860

128518

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179328860_179333153_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: