Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

179333269 - 179336191

Intron Length:

2923

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TTTTATTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

CATGTTTTATTT

Flanking Amino Acid:

LPEHEDSKSLEQYSELRINV

Intron Amino Acid Position:

878

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

77.9

36.8

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

93.8

0.99

0.6

92.5

25.7

Minor 5ss

36.4

-1.5

3.3

46.1

43.6

Minor BPS

49.1

0.01

1.7

63.49

Associated Gene:

Gene:

LMO7

Ensembl Gene ID:

ENSAPLG00000005073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044917

179308196 - 179434860

126665

ENSAPLT00000005308

179306332 - 179348932

42601

ENSAPLT00000030762

179306343 - 179434860

128518

ENSAPLT00000042547

179306343 - 179349632

43290

ENSAPLT00000020897

179308196 - 179434860

126665

ENSAPLT00000020174

179308196 - 179434860

126665

ENSAPLT00000037923

179308196 - 179434860

126665

ENSAPLT00000045696

179306343 - 179434860

128518

ENSAPLT00000019090

179308196 - 179434860

126665

ENSAPLT00000034373

179306343 - 179434860

128518

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179333269_179336191_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: