Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

179336233 - 179336385

Intron Length:

153

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGAGA

5'SS Class:

strong_major

3'SS Sequence:

ACATCTTCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTGAT

U12 Branch Point Sequence:

TTTCACTTACAT

Flanking Amino Acid:

SLSISVHGSRENVSLPEHED

Intron Amino Acid Position:

864

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.7

0.84

0.9

74.8

Major BPS

78.8

0.71

67.6

40.6

Major PPT

76.1

0.59

0.9

69.8

35.7

Minor 5ss

26.2

-2.7

2.9

30.9

42.7

Minor BPS

56.4

0.28

1.9

80.16

Associated Gene:

Gene:

LMO7

Ensembl Gene ID:

ENSAPLG00000005073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005308

179306332 - 179348932

42601

ENSAPLT00000030762

179306343 - 179434860

128518

ENSAPLT00000044917

179308196 - 179434860

126665

ENSAPLT00000020897

179308196 - 179434860

126665

ENSAPLT00000042547

179306343 - 179349632

43290

ENSAPLT00000020174

179308196 - 179434860

126665

ENSAPLT00000037923

179308196 - 179434860

126665

ENSAPLT00000019090

179308196 - 179434860

126665

ENSAPLT00000034373

179306343 - 179434860

128518

ENSAPLT00000045696

179306343 - 179434860

128518

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179336233_179336385_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: