Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

179336516 - 179337288

Intron Length:

773

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAAATTC

5'SS Class:

major

3'SS Sequence:

ATTTTTGTCCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

ATTTACCAAACT

Flanking Amino Acid:

GISSLPRSLTMDDTQKYNGE

Intron Amino Acid Position:

821

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

69.6

35.9

Major BPS

90.4

0.7

90.2

19.3

Major PPT

76.7

0.6

0.9

69.9

40.9

Minor 5ss

42.3

-0.8

3.2

44.7

Minor BPS

52.7

0.16

2.2

80.45

40.9

Associated Gene:

Gene:

LMO7

Ensembl Gene ID:

ENSAPLG00000005073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020897

179308196 - 179434860

126665

ENSAPLT00000042547

179306343 - 179349632

43290

ENSAPLT00000020174

179308196 - 179434860

126665

ENSAPLT00000037923

179308196 - 179434860

126665

ENSAPLT00000019090

179308196 - 179434860

126665

ENSAPLT00000034373

179306343 - 179434860

128518

ENSAPLT00000045696

179306343 - 179434860

128518

ENSAPLT00000005308

179306332 - 179348932

42601

ENSAPLT00000030762

179306343 - 179434860

128518

ENSAPLT00000044917

179308196 - 179434860

126665

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179336516_179337288_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: