Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

179337737 - 179339046

Intron Length:

1310

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGACC

5'SS Class:

strong_major

3'SS Sequence:

TCTGTCCCCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GGGATTTTAATA

Flanking Amino Acid:

SKSLKEMEQEREDRDQDSYR

Intron Amino Acid Position:

671

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

72.4

37.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

71.4

0.48

0.8

65.6

30.5

Minor 5ss

33.6

-1.9

3.1

44.3

43.2

Minor BPS

0.15

1.3

56.81

36.7

Associated Gene:

Gene:

LMO7

Ensembl Gene ID:

ENSAPLG00000005073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005308

179306332 - 179348932

42601

ENSAPLT00000030762

179306343 - 179434860

128518

ENSAPLT00000044917

179308196 - 179434860

126665

ENSAPLT00000020897

179308196 - 179434860

126665

ENSAPLT00000042547

179306343 - 179349632

43290

ENSAPLT00000020174

179308196 - 179434860

126665

ENSAPLT00000037923

179308196 - 179434860

126665

ENSAPLT00000019090

179308196 - 179434860

126665

ENSAPLT00000034373

179306343 - 179434860

128518

ENSAPLT00000045696

179306343 - 179434860

128518

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179337737_179339046_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: