Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

179339190 - 179340221

Intron Length:

1032

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAATACT

5'SS Class:

major

3'SS Sequence:

GTGATTCTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAT

U12 Branch Point Sequence:

GTTCTTGTGATT

Flanking Amino Acid:

LQEQDLKWQEDLAKWKNRRK

Intron Amino Acid Position:

624

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.4

0.67

80.6

31.6

Major BPS

86.1

0.9

0.7

85.7

22.9

Major PPT

72.3

0.5

0.9

66.3

40.6

Minor 5ss

39.4

-1.2

2.9

52.6

38.1

Minor BPS

47.3

-0.1

68.02

37.4

Associated Gene:

Gene:

LMO7

Ensembl Gene ID:

ENSAPLG00000005073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020897

179308196 - 179434860

126665

ENSAPLT00000042547

179306343 - 179349632

43290

ENSAPLT00000020174

179308196 - 179434860

126665

ENSAPLT00000037923

179308196 - 179434860

126665

ENSAPLT00000019090

179308196 - 179434860

126665

ENSAPLT00000034373

179306343 - 179434860

128518

ENSAPLT00000045696

179306343 - 179434860

128518

ENSAPLT00000005308

179306332 - 179348932

42601

ENSAPLT00000030762

179306343 - 179434860

128518

ENSAPLT00000044917

179308196 - 179434860

126665

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179339190_179340221_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: