About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179340340_179343024_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
179340340 - 179343024
Intron Length:
2685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
ATATGATGAAGC
Flanking Amino Acid:
RLFQKLSDEQGSKSLNDVSA
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
75.8
0.64
1
65.8
41
Major PPT
91.2
0.93
0.6
85.4
29.4
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
42.7
-0.5
2.2
55.95
41.8

Associated Gene:

Gene:
LMO7
Ensembl Gene ID:
ENSAPLG00000005073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030762
179306343 - 179434860
128518
ENSAPLT00000044917
179308196 - 179434860
126665
ENSAPLT00000020897
179308196 - 179434860
126665
ENSAPLT00000042547
179306343 - 179349632
43290
ENSAPLT00000019090
179308196 - 179434860
126665
ENSAPLT00000037923
179308196 - 179434860
126665
ENSAPLT00000005308
179306332 - 179348932
42601
ENSAPLT00000034373
179306343 - 179434860
128518
ENSAPLT00000045696
179306343 - 179434860
128518