About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179340340_179347480_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
179340340 - 179347480
Intron Length:
7141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGGTG
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
ATATGATGAAGC
Flanking Amino Acid:
VYTESDGTFSRSKSLNDVSA
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
60.8
43.9
Major BPS
75.8
0.64
1
65.8
41
Major PPT
91.2
0.93
0.6
85.4
29.4
Minor 5ss
31.8
-2.1
3.8
46.5
48.8
Minor BPS
42.7
-0.5
2.2
55.95
41.8

Associated Gene:

Gene:
LMO7
Ensembl Gene ID:
ENSAPLG00000005073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020174
179308196 - 179434860
126665