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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179343055_179347480_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
179343055 - 179347480
Intron Length:
4426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGGTG
5'SS Class:
major
3'SS Sequence:
TCTAATTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTTGATT
Flanking Amino Acid:
VYTESDGTFSRLFQKLSDEQ
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
60.8
43.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.1
0.65
0.9
76.5
37.1
Minor 5ss
31.8
-2.1
3.8
46.5
48.8
Minor BPS
77.3
0.94
1
89.84
27.4

Associated Gene:

Gene:
LMO7
Ensembl Gene ID:
ENSAPLG00000005073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020897
179308196 - 179434860
126665