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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179345213_179345649_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
179345213 - 179345649
Intron Length:
437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGATACT
5'SS Class:
major
3'SS Sequence:
TTATACGCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTTGTTTTATA
Flanking Amino Acid:
GKILEASDQPSQFSLLQALQ
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.2
69.8
40.4
Major BPS
76.8
0.67
1
66
40.9
Major PPT
74.3
0.55
1
70.5
40.6
Minor 5ss
32.7
-2
3
44
43.3
Minor BPS
56.4
0.19
2
74.49
37.5

Associated Gene:

Gene:
LMO7
Ensembl Gene ID:
ENSAPLG00000005073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042547
179306343 - 179349632
43290
ENSAPLT00000030762
179306343 - 179434860
128518
ENSAPLT00000019090
179308196 - 179434860
126665
ENSAPLT00000045696
179306343 - 179434860
128518
ENSAPLT00000005308
179306332 - 179348932
42601
ENSAPLT00000044917
179308196 - 179434860
126665