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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_179345848_179346091_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
179345848 - 179346091
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTATGCACAGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTGTGCTTATGC
Flanking Amino Acid:
KPWYKEIQGFRKKSDSEDEG
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
84.1
29.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
62.1
0.27
1
57.5
38.3
Minor 5ss
39.6
-1.2
3.2
57.9
46.7
Minor BPS
48.5
-0.1
2.3
65.63
46.2

Associated Gene:

Gene:
LMO7
Ensembl Gene ID:
ENSAPLG00000005073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030762
179306343 - 179434860
128518
ENSAPLT00000045696
179306343 - 179434860
128518
ENSAPLT00000019090
179308196 - 179434860
126665
ENSAPLT00000044917
179308196 - 179434860
126665
ENSAPLT00000005308
179306332 - 179348932
42601
ENSAPLT00000042547
179306343 - 179349632
43290
ENSAPLT00000034373
179306343 - 179434860
128518